ID=282f59dfd5394e00ff7182253c048c4f65f101fc

Description

Oligo probes for Calanus finnmarchicus microarray, used in an experiment to investigate possible metabolic change caused by seismic activity.

Provenance

Separately using contigs and singletons from a 454 cDNA contig assembly, and Agilent eArray probe design web software. Sequences redirected based on BLAST hits using Korfu. Created from CalFin1array by renaming sequences to non-generic names. All sequences (exept ones from GenBank) are prefixed with CalFin_rna1_, and suffixed with c#c### - CL#contig# (cluster number and contig number from TGICL) c##### - contig#### (from Newbler assembly) i##### - isotig#### (from Newbler assembly) The following translation was used: sed -e 's/^CL\([0-9]*\)Contig\([0-9]*\)/CalFin_rna1_cl\1c\2/g' -e 's/^contig\([0-9]*\)/CalFin_rna1_c\1/g' -e 's/^isotig\([0-9]*\)/CalFin_rna1_i\1/g'

Files

PathDescriptionTypechecksum

contigs_redir.fasta assembled contigs text/x-fasta-rna 3d3fdc95802b8f164621da438f743de07b55e36d
PGRID184070_1282549460522 Probes text/csv 09aed0c9fe1c0071aff20c23149e1a608f29112d
PGRID184071_1282549549249 Probes text/csv db471f1ec91ff951a7d39b6e9a01d5fa92f03fa2
singletons_redir.fasta singletons from assembly text/x-fasta-rna 4133b24c301c1bfcbf3755beac5e174abf3d307b
transcriptome-ref.fasta transcriptome reference (singletons+contigs) text/x-fasta-rna e558827aba3ccad7dc924e2b85f6da983b9003d2