ID=228cf5e37d5ad1a61bf87141545908818cc73ff0

Description

Various transcriptome for L. salmonis, based on the LSalAtl2s assembly. Produced by IMR (Tomasz Furmanek) and EBI (Michael Nuhn).

Provenance

Using various tools: PASA, Augustus, and the EBI pipeline.

Files

PathDescriptionTypechecksum

fasta/EBI_and_IMRwithannot.fa Predicted genes with SwissProt or UniRef90 annotations text/x-fasta-rna 41a4a4042f93464afd3712ce9f8593d8897a16bb
fasta/Lepeophtheirus_salmonis_6.LSalAtl2s.19.cdna.all.fa EBI predicted transcripts text/x-fasta-rna 5c86aa6d3981ca06e28d488668df57698a8367ee
fasta/sanger-strict.final.pred.fasta Predicted genes using training from clcAll50 text/x-fasta-rna 0e2c8382badf3c8f5ce6265e9e29b416509517e9
fasta/aug_LSalAtl2s_allhintsB.pred.fasta Predicted genes using RNAseq and EST hints (all PASA candidates used) text/x-fasta-rna b620d514d242dc959f83596909906513dee31700
fasta/LSalAtl2s.fasta_augpred.fasta Predicted genes using RNAseq training and RNAseq assembly hints text/x-fasta-rna 8cab8074f6d351c943a06ba0a0446953e1446f73
fasta/EBI_and_IMRannot_and_IMR_RNAseq.fa EBI predictions, annotated IMR predictions, and unannotated IMR predictions with more than 10 RNAseq reads mapped text/x-fasta-rna a9901dbb64f7f92609cb7074ae797cec5fd26c16
fasta/aug_LSalAtl2s_allhintsA.pred.fasta Predicted genes using RNAseq and EST hints (best PASA candidates used) text/x-fasta-rna c0b3db0aeb254acd15037209a7699b84af30ea66
predictions/aug_LSalAtl2s_allhintsA.gff Mapping of genes to the genome text/x-gff3 6645149255e97f88314dbc05039126da84fec0f0
predictions/aug_LSalAtl2s_allhintsB.gff Mapping of genes to the genome text/x-gff3 5d5a27e8db66420b4d47708ef403799532d7eeff
predictions/sanger-strict.final.scaffolds.augustus.gff Mapping of genes to the genome text/x-gff3 05de3d0b158570368cbd14e32638aacc7110831b
predictions/LSalAtl2s.fasta_aug_rnaseqhints2.gff Mapping of genes to the genome text/x-gff3 129cf6f3b3e98b8797b4abf8757cba6d212824be
hints/best_candidates.gff3 PASA candidates used for training text/x-gff3 7be2490d2e7ce4598a9e5d2c413c43b37a7133a7
hints/trainingSetCandidates.gff3 PASA candidates used for training text/x-gff3 9f2f1e686dd585158bac2d2f0ee4a7b936a392fc
annotations/aug_LSalAtl2s_allhintsA_vs_uniref90_20130618.csv Annotations text/csv 90472bc1a608934c9691177115592767a3746c8f
annotations/aug_LSalAtl2s_allhintsB_vs_uniref90_20130618.csv Annotations text/csv fac817c976fc824207f26ea031d53b8aee7e4198
annotations/aug_LSalAtl2s_allhintsA_vs_sprot20130618.csv Annotations text/csv ea7889ebc61c09df3e5fd4f2cd1f263d214a70fc
annotations/aug_LSalAtl2s_allhintsB_vs_sprot20130618.csv Annotations text/csv 9a0457808543e65480f7ab7324bd00498d8be546
aa/aug_LSalAtl2s_allhintsB.pred.aa Predicted peptide sequences text/x-fasta-prot bac477023656d68c92e596f872919b49c0b65bac
aa/sanger-strict.final.scaffolds.pred.aa Predicted peptide sequences text/x-fasta-prot 026acaea5580d28bff4be70e187453f92afa48f1
aa/Lepeophtheirus_salmonis_6.LSalAtl2s.19.pep.all.aa Predicted peptide sequences text/x-fasta-prot ba04d27cf62af9ae96da29ae1f7999827da9cc4f
aa/aug_LSalAtl2s_allhintsA.pred.aa Predicted peptide sequences text/x-fasta-prot 902e0e2514ecd96f1c83951b2af23e89287959bf
aa/LSalAtl2s.fasta_augpred.aa Predicted peptide sequences text/x-fasta-prot 4e5975412e4395f59070e4fd4c1ccb0c1c218219